Автоматизированная информационно-библиотечная система «Библиобус»: современная версия

The article is devoted to the work of the automated information library system (AILS) “Bibliobus”, developed by specialists of the Library for Natural Sciences of the Russian Academy of Sciences (LNS RAS). The purpose of this article is to acquaint readers of the journal with the specific features of the modern AILS “Bibliobus” that provides complex automation of the main technological processes on the “way of book” of non-periodicals received in the centralized library system (CLS) holdings of LNS RAS. The authors describe capability features and functions of the system, the rules of work with it, the user interface for performing work related to centralized acquisition, book registration and distribution of the incoming books between the CLS libraries, cataloguing, classifying, etc. The system has a number of features that distinguish it from most automated library systems. It is focused on the centralized library network; part of the information is entered in the Centre, part — interactively in the libraries of the network; all the accounting and financial documents required by the centralized system are generated automatically. The AILS “Bibliobus” widely uses the bar coding, it applies to all stages of publication processing on the “way of book”; the bar codes appear on all supporting documents and printed cards. When cataloguing the publications, bibliographer introduces in the main “window” of system the bibliographic description in the format of State Standard GOST 7.1—2003 with some mark-ups, and in additional “windows” — the maximum possible metadata, providing multi-aspect search of the publication in the catalogue; the search fields for e-catalogue are generated automatically. The AILS “Bibliobus” provides for the formation of multi-level records. Its database stores the images of scanned text pages displayed in the electronic catalogue; all operations are logged with the start and end time, which allowed building on its basis a powerful reference and statistical system. The system has a modern user interface that allows the operator to obtain multiple information on various aspects of technological operations.Статья посвящена работе автоматизированной информационно-библиотечной системы (АИБС) «Библиобус», разработанной специалистами Библиотеки по естественным наукам Российской академии наук (БЕН РАН). Цель статьи — познакомить читателей журнала с особенностями современной АИБС «Библиобус», обеспечивающей комплексную автоматизацию основных технологических процессов по «пути книги» непериодических изданий, поступающих в фонды ЦБС БЕН РАН. Описываются возможности и функции системы, правила работы с ней, пользовательский интерфейс при выполнении работ, связанных с централизованным комплектованием, регистрацией поступлений и распределением поступающих книг между библиотеками ЦБС, каталогизацией, систематизацией и т. д. Система имеет ряд особенностей, отличающих ее от большинства автоматизированных библиотечных систем. Она ориентирована на централизованную библиотечную сеть, часть информации вводится в центре, часть — в библиотеках сети в интерактивном режиме; все необходимые для централизованной системы учетно-финансовые документы формируются автоматически. В АИБС «Библиобус» широко используется штрих-кодирование — оно применяется на всех этапах обработки издания по «пути книги», штрих-коды выводятся на все сопроводительные документы и на печатные карточки. При каталогизации изданий библиограф вводит в основное «окно» системы библиографическое описание в формате ГОСТ 7.1—2003 с некоторой разметкой, а в дополнительные «окна» — максимально возможное количество метаданных, обеспечивающих многоаспектный поиск издания в каталоге; поисковые поля для электронного каталога формируются автоматически. АИБС «Библиобус» предусматривает формирование многоуровневых записей. В ее базе данных хранятся образы отсканированных страниц текста, выводимые в электронный каталог; протоколируются все операции с указанием времени начала и конца, что позволило построить на ее основе мощную справочно-статистическую систему. Система обладает современным пользовательским интерфейсом, позволяющим оператору получать информацию по различным аспектам технологических операций

Status Report of the DPHEP Study Group: Towards a Global Effort for Sustainable Data Preservation in High Energy Physics

Data from high-energy physics (HEP) experiments are collected with significant financial and human effort and are mostly unique. An inter-experimental study group on HEP data preservation and long-term analysis was convened as a panel of the International Committee for Future Accelerators (ICFA). The group was formed by large collider-based experiments and investigated the technical and organisational aspects of HEP data preservation. An intermediate report was released in November 2009 addressing the general issues of data preservation in HEP. This paper includes and extends the intermediate report. It provides an analysis of the research case for data preservation and a detailed description of the various projects at experiment, laboratory and international levels. In addition, the paper provides a concrete proposal for an international organisation in charge of the data management and policies in high-energy physics

Physical modelling of water, fauna and flora: knowledge gaps, avenues for future research and infrastructural needs

peer reviewedPhysical modelling is a key tool for generating understanding of the complex interactions between aquatic organisms and hydraulics, which is important for management of aquatic environments under environmental change and our ability to exploit ecosystem services. Many aspects of this field remain poorly understood and the use of physical models within eco-hydraulics requires advancement in methodological application and substantive understanding. This paper presents a review of the emergent themes from a workshop tasked with identifying the future infrastructure requirements of the next generation of eco-hydraulics researchers. The identified themes are: abiotic factors, adaptation, complexity and feedback, variation, and scale and scaling. The paper examines these themes and identifies how progress on each of them is key to existing and future eðorts to progress our knowledge of eco-hydraulic interactions. Examples are drawn from studies on biofilms, plants, and sessile and mobile fauna in shallow water fluvial and marine environments. Examples of research gaps and directions for educational, infrastructural and technological advance are also presented.PISCES work package of HYDRALAB FP

Chromosome-scale assembly of the Moringa oleifera Lam. genome uncovers polyploid history and evolution of secondary metabolism pathways through tandem duplication

The African Orphan Crops Consortium (AOCC) selected the highly nutritious, fast growing and drought tolerant tree crop moringa (Moringa oleifera Lam.) as one of the first of 101 plant species to have its genome sequenced and a first draft assembly was published in 2019. Given the extensive uses and culture of moringa, often referred to as the multipurpose tree, we generated a significantly improved new version of the genome based on long-read sequencing into 14 pseudochromosomes equivalent to n = 14 haploid chromosomes. We leveraged this nearly complete version of the moringa genome to investigate main drivers of gene family and genome evolution that may be at the origin of relevant biological innovations including agronomical favorable traits. Our results reveal that moringa has not undergone any additional whole-genome duplication (WGD) or polyploidy event beyond the gamma WGD shared by all core eudicots. Moringa duplicates retained following that ancient gamma events are also enriched for functions commonly considered as dosage balance sensitive. Furthermore, tandem duplications seem to have played a prominent role in the evolution of specific secondary metabolism pathways including those involved in the biosynthesis of bioactive glucosinolate, flavonoid, and alkaloid compounds as well as of defense response pathways and might, at least partially, explain the outstanding phenotypic plasticity attributed to this species. This study provides a genetic roadmap to guide future breeding programs in moringa, especially those aimed at improving secondary metabolism related traits.https://wileyonlinelibrary.com/journal/tpg2dm2022BiochemistryGeneticsMicrobiology and Plant Patholog

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe

Notas sobre a Carta de Veneza

This paper presents a critical reading of the Venice Charter, an Icomos key document, fruit of a conference held in 1964. The Charter is often quoted in Brazil but is not always properly understood. The conservation and restoration charters - especially those produced by international institutions - are documents that have an indicatory or, at the most, prescriptive character. They constitute the deontological foundation of many professionals involved in preservation, but they are not recipes for immediate use. In order to elaborate a well-founded reading of the document, its ideas must be understood in connection to the theoretical postulates of the time they were engendered and to the developments of the field. Thus this paper will examine these subjects, commenting and enlightening the Charter's articles and pointing out the origins of specific ideas. It also discusses how the Charter relates to previous documents and their theoretical foundations. This approach, based in a critical analysis, is necessary in order to reach a fuller interpretation of the Charter's indications so that they can be used in the present